Top 10 GST-Compliant Accounting Software in India (2025)

Since the implementation of GST on various products in India, it has become an integral part of society. For example, you can refer to the GST-compliant tools that can help you manage several aspects of your GST tax, such as automatic tax calculation, GST-compliant invoicing, E-invoicing assistance, purchase and sales management, etc. 

Moreover, these tools have several other features that can help you with your taxes. For instance, most of them are generating GST returns, ensuring data precision for avoiding penalties, automating GST calculations, etc. Also, there are a variety of GST-compliant tools to help you with different tasks, alongside different features. 

In this blog, we will talk about the top 10 best GST-compliant accounting software in India and what benefits they can provide while calculating your tax.

Why GST Compliance Is Critical for Business in India?

In short,  GST compliance is important for the Indian economy for various aspects, such as ensuring legal, commercial, and operational stability beneath the unified tax system of the region. Nonetheless, if you fail to follow these compliance, it might cause several penalties, such as loss of ITC (Input Tax Credit) alongside many business disruptions. 

Nonetheless, here are some points that suggest why GST compliance is critical in Indian business:

Legal Obligation 

All businesses in India must exceed the threshold limit, such as 40 lakh rupees for food and 20 lakh rupees. There are several factors, such as a timely return filing, invoicing, registration, and others, which fall legally under the GST Act. 

Avoiding Fines And Penalties 

If you file your GST taxes late or incorrectly, it might cause late fees or an 18 percent interest on your tax. Moreover, the non-filing of returns can also cause cancellation of your GST registration. 

Claiming ITC (Input Tax Credit)

In India, only compliant businesses can claim ITC (Input Tax Credit), which can decrease the tax liability. Nonetheless, if vendors or retailers are non-compliant, the purchaser might lose the Income Tax Credit, which then will increase the operational value. 

Facilities, Business Credibility, And Expansion

Several facilities prefer GST-compliant businesses, such as big enterprises, banks, government customers, etc. Moreover, it also creates reliability and transparency with suppliers, regulatory administrations, and consumers.

The Role of Accounting Software in GST Filing And Reporting 

The significance of accounting software in GST reporting and filing is crucial in many aspects. For instance, it helps several businesses and organisations to decrease tax errors, stay compliant, and preserve time under the GST (Goods and Services Tax) regime of India. Nonetheless, some of the key roles of this software are:

Automatic GST Calculation 

The accounting software can calculate IGST, CGST, and SGST relying on several factors, such as:

• Service/product HSN/SAC code. 
• Applicable GST code. 
• Place of supply.

Invoice of GST-Compliant 

The accounting software can create invoices with various factors, such as:

• Tax rate breakup (IGST, CGST, and SGST). 
• Invoice number, GSTIN, and HSN/SAC codes. 
• Reverse charge application. 

Concurrent GST Reports

The facility generates key reports which you will require for:

• GSTR-1 (outward supplies.
• GSTR-2A/2B reconciliation.
• GSTR-3B (summary returns).
• GSTR-9 (yearly return).

E-Filing Combination with GSTN 

Indirect and direct GST Network (GSTN) combination allows you:

• Receiving error reports and filling status. 
• Submit returns from the software.
• Uploading the invoice information.

What Is GST-Compliant Accounting Software?

You can mainly refer to a GST-compliant accounting software as a digital solution that can assist businesses and companies in India in managing and automating their commercial records while completely complying with GST (Goods and Services Tax) policies by the Indian government. 

Also, this software can incorporate various factors such as invoicing, tax calculation, reconciliation, reporting, and many more into a single platform. Moreover, this facility makes it convenient for corporations and businesses to adhere to GST compliance and avoid penalties. 

Key Features of A GST-compliant Accounting Software 

There are a lot of key features that come with a GST-compliant accounting software. Moreover, despite their several usages, here are some prominent facilities of such software you can follow:

GST-Compliant Invoicing 

The software can automatically create invoices that include:

• HSN/SAC codes.
• GSTIN of sellers and buyers. 
• Reverse change applications.
• Tax breakups such as IGST, SGST, and CGST.

Audit Reporting And Trail

The accounting software maintains a clear log of all changes and transactions. Nonetheless, this software can generate:

• Tax liability statements.
• GST summary reports.
• Sales and purchase registers. 

E-Invoicing Incorporation 

The software offers various E-invoicing incorporation features, such as:

• Generating e-invoices with QR codes and IRN.
• Auto-syncing with IRP (Invoice Registration Portal).
• E-Invoicing Incorporation is necessary for corporations and businesses above the turnover threshold. 

E-Way Bill Creation

The GST accounting software has various ways to create e-way bills, such as:

• Compiling with e-way bill policies concurrently. 
• Auto-filling consignment information and transports.
• Managing and creating e-way bills for the goods ecosystem. 

Comparison Table: Best GST Accounting Tools at a Glance

Software	Best For	GST Filing	E-invoicing	Free Trial	Starting Price
Tally.ERP 9	Medium to small businesses looking for GST solutions	Yes	Yes	Yes	750 rupees each month
ClearTax GST Software	Big corporations and chartered accountants that produce larger invoice volumes	Yes	Yes	Yes	40,000 rupees for one year
Zoho GST Software	Small corporations that operate with Zoho One	Yes	Yes	Yes	749 rupees each month
Gen GST Online (SAG Infotech)	Medium-sized Indian companies that are looking for new tools as they extend their growth	Yes	Yes	No	7,000 rupees per month
Marg GST Software	Distribution and shop groups that operate with high volumes	Yes	Yes	Yes	5,400 rupees per month
Webtel GST Software	Tax advisers and chartered accountants who are looking for strong compliance	Yes	Yes	Yes	7,000 rupees per piece
ClearOne Software	Companies already operating with the QuickBooks facility and require efficient upgradation	Yes	Yes	Yes	529 rupees per month
Vyapar GST Software	Solo founders and minor corporations in India are looking for GST accounting software	Yes	Yes	Yes	3,420 rupees per year
HostBooks GST Software	Emerging SMEs looking for budget-friendly accounting software	Yes	Yes	Yes	Contact the authority
Commenda	Big corporations and chartered accountants are looking for concurrent viability.	Yes	Yes	Yes	Contact the authority

Top 10 GST-Compliant Accounting Software in India (2025)

As we have gone through various key features and roles of GST-compliant accounting software in India for managing your GST taxes, here are the top 10 GST accounting software you can refer to:

1. Tally.ERP 9

At the top of our list, we will suggest the Tally.ERP 9 accounting software for GST. The software has gained immense popularity in India for business management and accounting software. Also, the software offers users an extensive solution for various tasks. 

Moreover, some of these tasks are GST compliance, payroll, banking, inventory management, accounting, and many more. Nonetheless, the software also has many offline features that significantly compel users. 

Key Facilities 

• Creating invoices, issuing e-invoices, and generating e-way bills.
• You can file GSTR-1 and GSTR-3B automatically from every sale. 
• Tracking sales, buys, and stocks by implementing SAC and HSN codes. 
• Managing several locations and firms from a single login. 

Pros And Cons 

• Pros: All-over industry features beyond the GST functionalities. 
• Cons: Complex learning curve for beginners and only operable on desktops.

Best For: Medium to small businesses looking for GST solutions. 

Pricing 

• 750 rupees each month.
• 2,138 rupees for three months.
• 8,100 for a year. 

Link: https://tallysolutions.com › ERP Software

2. ClearTax GST Software 

At the second position for top GST-compliant accounting software in India, we will recommend users with the ClearTax GST software, developed by a prominent fintech organisation, ClearTax, in India. The software is mainly a cloud-driven return-filing and GST compliance software for various purposes.

Moreover, the software is ideal for several professions such as tax experts, Indian companies, enterprises, and many more. Nonetheless, the software can assist you in automating reconciliation, GST return preparation, etc. 

Key Facilities 

• Pulling data from more than 100 ERPs, alongside matching over 6,000 invoices each minute.
• Claiming a 100 percent Income Tax Credit by automatically pairing entries.
• Examining more than 25 analyses, supported by professional verification.

Pros And Cons 

• Pros: Efficient performance capability with several security features such as SSL and ISO.
• Cons: There is no public display for charges, and the software is mainly ideal for CA firms.

Best for: Big corporations and chartered accountants that produce larger invoice volumes. 

Pricing

• 40,000 rupees for the one-year package. 

Link: https://cleartax.in › gst

3. Zoho GST Software

Coming up next, another example of a top GST-compliant accounting software in India is the Zoho GST software. Just like other GST accounting software in India, this facility also provides its services through cloud-based features. The software is also ideal for Indian businesses to perform various tasks. 

For example, some of these tasks are tax filing, accounting automation, Invoicing, reporting under the GST (Goods and Services Tax) policies, and many more. Nonetheless, the facility is also an integral part of the Zoho ecosystem.

Key Facilities 

• Handling filing for various facilities such as GSTR-3,2, and 1, and keeping tabs on Income Tax Credit.
• Matching GSTR-4 to your buying invoices directly.
• Setting role-driven accessibility for your organization group to provide safety.
• Pulling a clear analysis of claimed credits and paid taxes.

Pros And Cons 

• Pros: Budget-friendly option for most users and a part of the Zoho ecosystem.
• Cons: Restricted functions for links outside ERPs.

Best for: Small corporations that operate with Zoho One. 

Pricing 

• 749 rupees each month.

Link: https://www.zoho.com › books › gst-accounting-software

4. Gen GST Online (SAG Infotech)

Another prominent mention of top GST-compliant accounting software in India goes to the Gen GST Online software by SAG Infotech. Also, the facility is ideal for many professions such as GST practitioners, chartered accountants, businesses, corporations, etc.

Moreover, the software fulfills several requirements of businesses and companies. For example, you can refer to e-invoicing, e-way bill management, extensive GST filing, and many more. Nonetheless, the services are available in both online and offline facilities. 

Key Facilities 

• Filling from GSTR-1 to GSTR-9/C and developing e-way bills.
• Drafting payment vouchers, credit notes, RCM entries, debit notes, draft invoices, etc.
• Picking a free trial while also paying for the specific module for your usage, such as e-invoice, e-filing, and even the complete suite. 

Pros And Cons 

• Pros: Covering each tax job and several free trial benefits.
• Cons: The robust availability of several module choices may often confuse users while selecting the right plan.

Best for: Medium-sized Indian companies that are looking for new tools as they extend their growth. 

Pricing

• 7,000 rupees per month. 

Link: https://saginfotech.com › gst-software

5. Marg GST Software 

There are several GST-compliant accounting software you can find, and most of them have their unique functionality. Furthermore, another example of a unique top GST-compliant accounting software in India is the Marg GST software. This software is a solution for various facilities such as billing, GST-compliant accounting, inventory, etc.

The software is broadly popular in several industries in India. For example, you can refer to industries like retail, distribution, pharma, manufacturing companies, and many more. Moreover, the software also provides offline features to its users for easy accessibility. 

Key Facilities 

• Exporting and importing data in various formats like CSV, JSON, and Excel, alongside auto-reconciling GSTR-2A.
• Getting mismatch notifications for orderly internal records and facilities, like the e-invoice IRP link. 
• Getting several notifications, such as quotes, payments, reports, invoices, and many in a single place. 

Pros And Cons 

• Pros: Automatic mistake-checking verifications and fast invoices.
• Cons: Old-looking interface and barcode problems.

Best for: Distribution and shop groups that operate with high volumes. 

Pricing 

• Nano Tier: 5,400 rupees per month.
• Basic Tier: 9,999 rupees each month.
• Silver Tier: 13,500 rupees per month.
• Gold Tier: 25,000 rupees each month. 

Link: https://margcompusoft.com/gst_software.html

6. Webtel GST Software 

There are a lot of GST accounting software you can find on the internet, and one of the top GST-compliant accounting software in India we can refer you to is the Webtel GST software. The facility is ideal for many professions, such as CA firms, taxation experts, SMEs, accounting teams, etc. 

Nonetheless, there are a lot of facilities you can find in this software. For example, you can refer to modern reconciliation facilities, simplistic return filing, and a deep ERP integration with various systems like Busy, Oracle, SAP, and many more. 

Key Facilities 

• Managing shipping bills and e-invoices alongside filing GSTR-1 and GSTR-3B. 
• Direct uploads to the GST portal and extracting data from various account facilities and Excel. 
• Uploading bulk records instantly and creating your templates.

Pros And Cons 

• Pros: A strong prestige from various firms and efficient SAT API links. 
• Cons: Basic dashboards with more emphasis on rules.

Best for: Tax advisers and chartered accountants who are looking for strong compliance. 

Pricing 

• 7,000 rupees per piece. 

Link: https://webtel.in/gst-filing-software

7. ClearOne Software 

Another major reference of a GST accounting software is the ClearOne software, which is one of the top GST-compliant accounting software in India. The software had a previous name, which was QuickBooks GST. Also, this software is among the cloud-based facilities you can find on the internet.

Moreover, this GST accounting software is ideal for various professions such as freelancers, SMEs, and several minor organisations in various sectors of India. Nonetheless, the software is mainly for its digital invoicing and convenient GST compliance facilities. 

Key Facilities 

• Facilities such as the live GST dashboards and accessibility on various platforms like tablets, desktops, and phones. 
• Finding the perfect tax code and keeping a collection of HSN/SAC. 
• Linking with more than 50 cloud applications.

Pros And Cons 

• Pros: User-friendly interface for easy accessibility and navigation.
• Cons: It requires a subscription-based payment. 

Best for: Companies already operating with the QuickBooks facility and require efficient upgradation. 

Pricing 

• 529 rupees per month.

Link: https://www.clear.in/clearone/

8. Vyapar GST Software 

Among all the GST accounting software you can find, Vyapar GST Software is among the top GST-compliant accounting software in India. Also, this software is mainly for tailoring billing applications and GST-compliant accounting for Indian SMEs. 

Furthermore, you can access the features of this software in both online and offline modes. Moreover, it also supports various operating systems such as Windows and Android. Nonetheless, there are more than 24 lakh businesses that operate with this software.

Key Facilities 

• Offline accessibility and smartphone support. 
• You can expense logs, instant reports, and delivery challans. 
• Several facilities, such as stock regulations, payment nudges, and GST invoices. 

Pros And Cons 

• Pros: Free trials with basic features and a user-friendly interface. 
• Cons: Restricted advanced tools. 

Best for: Solo founders and minor corporations in India looking for GST accounting software.

Pricing 

• 3,420 rupees per year.

Link: https://vyaparapp.in

9. HostBooks GST Software 

Coming up next for the GST accounting software, we are going to refer you to the HostBooks GST software, which is also one of the top GST-compliant accounting software in India. The facility is an official approval from the GST network, providing flawless and secure GST solutions to various companies. 

Moreover, if we talk about solutions the software offers, it generally includes billing, reconciliation, registration, and return filing through API incorporation with GSTN. 

Key Facilities 

• Automatic Income Tax Credit and tax dues, and matching invoices. 
• Supporting various templates and personalized layouts for every industry.
• Operating with cloud-driven facilities and has a linking capacity with various ERPs. 

Pros And Cons 

• Pros: Budget-friendly and provides users with mismatching notifications. 
• Cons: Restricted reporting facilities and a basic interface. 

Best for: Emerging SMEs looking for budget-friendly accounting software. 

Pricing 

• Contact the authority. 

Link: https://www.hostbooks.com/in/hb/gst-software/

10. Commenda

At the end of our list for GST-compliant accounting software, we will refer you to the Commenda software. Also, just like many other accounting facilities, it is among the top GST-compliant accounting software in India. Unlike other options in our list, this software operates on a global level. 

Moreover, the software offers various facilities for GST accounting and other solutions. For example, you can refer to sales tax, VAT/GST, corporate tax, and many more. It also provides its services across various regions such as the U.K., U.S, Singapore, etc.

Key Facilities 

• Smart analysis for detecting errors before impacting the finances. 
• Several features, such as intuitive dashboards, personalized workflows, concurrent notifications, and many more. 
• Automatic data ingestion by integrating through the API to the ERP. 

Pros And Cons 

• Pros: Efficient automation facility and strong security features.
• Cons: The facility requires constant internet access for operations. 

Best for: Big corporations and chartered accountants looking for concurrent viability.

Pricing

• Contact the authority. 

Link: https://www.commenda.io/sales-tax

How to Choose The Right GST Accounting Software for Your Business?

Choosing the ideal GST accounting software for your business will require you to follow various steps. For example, you can refer to:

• Identifying your business requirements, whether you are a wholesaler, manufacturer, or retailer. 
• Checking for crucial GSR compliance facilities such as the support for GSTR-1, GSTR-38, GSTR-9, and many more. 
• Accessibility and user-friendliness for various platforms support and features like offline mode. 
• Integration with various systems such as the billing system or ERP, bank feeds, APIs, e-commerce platforms, etc. 

GST Filing and Reporting Made Easy: What to Expect?

Implementing advanced GST accounting software changes complex processes into an efficient and streamlined route. For instance, you can follow these points:

• Automatic GST invoice generation for smart templates that can automatically fill tax rates, supply places, and customer data. 
• Concurrent tax calculation, which involves calculating IGST, CGST, and SGST, relies on the transaction category.
• Single-click GSTR filing for bulk invoices, offline JSON exports, API-driven direct filing, and many more. 
• Automatic reconciliation with GSTR-2A/2B for matching your buying records. 

Free vs Paid GST Accounting Software: What’s The Difference?

While choosing a facility for GST accounting software, you have to consider your budget choices, such as whether you are choosing a free option or a paid one. Nonetheless, while selecting among these options, you have to look at the benefits and disadvantages that come along. For instance, you can refer to:

Free GST Accounting Software Benefits And Disadvantages 

Several benefits come with the free GST accounting software, such as:

• Downloadable GST reports. 
• Restricted consumer and vendor data management. 
• Some desktop and mobile accessibility.
• General GST-compliant invoice creation. 

Many disadvantages come with the GST accounting software, for instance:

• No Instant API incorporation with GSTN.
• Lack of backups, multi-user availability, data security, etc.
• Restricted or no updates.
• No e-way bill and e-invoicing generation.

Paid GST Accounting Software Benefits And Disadvantages 

If we talk about the various advantages of paid accounting software, we will get:

• Multi-user and multi-GSTN support.
• Automatic Income Tax Credit reconciliation with GSTR-2A/2B.
• Flawless integration with marketplaces, banks, and ERPs. 
• Built-in audit logs, inventory, accounting, and many more. 

Moreover, the only disadvantages that might come with paid GST accounting software will consist of high pricing or less advanced features.

Common Challenges with GST Compliance (And How Software Solves Them)

There are several challenges you will encounter with GST compliance, such as:

• Complex GST return filing, including different reconciliation needs, deadlines, and formats. 
• Mismatching in ITC (Input Tax Credit), such as differences between GSTR-2A/2B.
• Several manual errors in invoices, such as wrong HSN/SAC codes, tax rates, and many more. 
• Lack of concurrent tax visibility sometimes leads to missed liabilities. 

In Conclusion 

Many necessities come with selecting the right GST accounting software for your business. For example, it is crucial to stay on top of tax regulations, reducing compliance risks, streamlining business operations, and many more. Moreover, you can also look for tools that match your business requirements. 

Each GST compliance accounting software you can find in the market will provide you with unique features and benefits for your objectives. However, you must choose a reliable tool based on various factors such as business or company size, sectors, requirements, etc.

FAQs

1. What is the best and most efficient GST filing software in India?

– Although the subject of the most efficient GST filing software in India relies on personal preference, some of the choices include Gen GST Software, Vyapar, etc.

2. What is the most used accounting software in India?

 There are several accounting software that have high usage, for instance, you can refer to Marg ERP, Zoho Books, GST billing software, etc.

3. What are some free accounting software available in India?

– Some of the free accounting software in India mostly includes Odoo, QuickBooks, Vyapar, and many more. 

4. What is the most usable tax software for accountants?

– There are various usable tax software that accountants use, for example, they are ClearTax, Tally, Marg GST, and HostBooks GST.